Peer reviewed articles
32. |
G. Flamourakis, Q. Dong, D. Kromm, S. Teurlings, J. van Haren, T. Allertz, H. Smeenk, F.M.S. de Vrij, R.P. Tas, C.S. Smith, D. Brinks, A. Accardo. Deciphering the Influence of Effective Shear Modulus on Neuronal Network Directionality and Growth Cones Morphology via Laser-assisted 3D Printed Nanostructured Arrays Advanced Functional Materials, in press, (2024) |
31. |
A. Castañeda Garcia, J. van Gemert, D. Brinks, N. Tömen Learning Physics From Video: Unsupervised Physical Parameter Estimation for Continuous Dynamical Systems arXiv (2024) doi: 10.48550/arXiv.2410.01376 |
30. |
M. Locarno, Q. Dong, X. Meng, C. Glessi, D. Brinks Fluorescence enhancement of fluorophores in live cells using metallic nanoparticles Neurophotonics II, 13007, 13-17(2024) doi: 10.1117/12.3017177 |
29. |
L.Engwegen, D. Brinks, W. Böhmer Generalisation to unseen topologies: Towards control of biological neural network activity arXiv (2024) doi: 10.48550/arXiv.2407.12789 |
28. |
M. Locarno, Q. Dong, X. Meng, C. Glessi, N. M. Hettema, N. Brandsma, S. Blokhuizen, A. C. Garcia, T. Schmidt, S. Ganapathy, M. Post, L. van Roemburg, B. Xu, C.-T. Cho, L. Laan, M.-P. Chien, D. Brinks Plasmonic Enhancement of Protein Function BioRxiv (2024) doi: 10.1101/2024.02.07.579195 |
27. |
M. Locarno, D. Brinks Analytical calculation of plasmonic resonances in metal nanoparticles: A simple guide American Journal of Physics, 91(7):538 (2023) doi: 10.1119/5.0094967 |
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25. |
S. Ganapathy, X. Meng, D. Mossel, M. Jagt, D. Brinks Expanding the family of genetically encoded voltage indicators with a candidate Heliorhodopsin exhibiting near-infrared fluorescence Journal of Biological Chemistry, 299(13):104771 (2023) doi: 10.1016/j.jbc.2023.104771 |
24. |
X. Meng, L. Huismans, T. Huijben, G. Szabo, R. van Tol, I. de Heer, S. Ganapathy, D. Brinks A compact microscope for voltage imaging Journal of Optics, 24, 054004 (2022) doi: 10.1088/2040-8986/ac5dd5 |
23. |
M.-P. Chien, D. Brinks Functional single-cell sequencing links dynamic phenotypes to their genotypes. Nature Biomedical Engineering, 6, 5, 501-502 (2022), doi: 10.1038/s41551-022-00877-3 |
22. |
L. You, P. Su, M. Betjes, R. G. Rad, T. Chou, C. Beerens, E. van Oosten, F. Leufkens, P. Gasecka, M. Muraro, R. van Tol, D. van Steenderen, S. Farooq, J. A. U. Hardillo, R. B. de Jong, D. Brinks*, M.-P. Chien* Linking the genotypes and phenotypes of cancer cells in heterogenous populations via real-time optical tagging and image analysis Nature Biomedical Engineering, 6, 5, 667–675 (2022), doi: 10.1038/s41551-022-00853-x |
21. |
W. Bloxham, D. Brinks, S. Kheifets, A.E. Cohen Linearly polarized excitation enhances signals from fluorescent voltage indicators Biophysical Journal, 120, 23, 5333-5342 (2021). doi: 10.1016/j.bpj.2021.10.028 |
20. |
Q. Li, C.N. Hulleman, R.J. Moerland, E. Mailvaganam, S. Ganapathy, D. Brinks, S. Stallinga, B. Rieger Waveguide-based total internal reflection fluorescence microscope enabling cellular imaging under cryogenic conditions Optics Express, 29, 21, 34097-34108 (2021). doi: 10.1364/OE.433945 |
19. |
M.-P. Chien*, D. Brinks*, G. Testa-Silva, H. Tian, F.P. Brooks III, Y. Adam, W. Bloxham, B. Gmeiner, S. Kheifets, A.E. Cohen Photoactivated voltage imaging in tissue with an Archaerhodopsin-derived reporter Science Advances, 7, 19, eabe3216 (2021). doi: 10.1126/sciadv.abe3216 |
18. |
Y. Adam, J.J. Kim, S. Lou, Y. Zhao, M.Xie, D. Brinks, H. Wu, M. A. Mostajo-Radji, S. Kheifets, V. Parot, S. Chettih, K.J. Williams, B. Gmeiner, S.L. Farhi, L. Madisen, E.K. Buchanan, I. Kinsella, D. Zhou, L. Paninski, C.D. Harvey, H. Zeng, P. Arlotta, R.E .Campbell, A.E. Cohen Voltage Imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics. Nature, 569, 413 (2019). doi: 10.1038/s41586-019-1166-7 |
17. |
D. Brinks, Y. Adam, S. Kheifets, A.E. Cohen Painting with rainbows: Patterning Light in Space, Time, and Wavelength for Optogenetic Sensing and Control Accounts of Chemical Research, 49, 2518–2526 (2016). doi: 10.1021/acs.accounts.6b00415 |
16. |
A. Abdelfattah, S. Farhi, Y. Zhao, D. Brinks, P. Zou, A. Ruangkittisakuul, J. PLatisa, V. Pieribone, K. Ballanyi, A.E. Cohen, R. Campbell A bright and fast red fluorescent protein voltage indicator that reports neuronal activity in organotypic brain slices Journal of Neuroscience 36, 8, 2458-2472 (2016). doi: 10.1523/JNEUROSCI.3484-15.2016 |
15. |
H.Lee*, D. Brinks*, A.E. Cohen Two-photon imaging of a magneto-fluorescent indicator for 3D optical magnetometry Optics Express, 23, 28022-28030 (2015). doi:10.1364/OE.23.028022 *equal contributions |
14. |
D.Brinks, A.J. Klein, A.E. Cohen Two-Photon fluorescence lifetime imaging (2P-FLIM) of genetically encoded voltage indicators as a probe of absolute membrane voltage Biophysical Journal, 109, 5,914-921 (2015). doi:10.1016/j.bpj.2015.07.038 |
13. |
12. |
P. Zou, Y. Zhao, A.D. Douglass, D.R. Hochbaum, D. Brinks, C.A. Werley, D.J. Harrison, R.E. Campbell, A.E. Cohen Bright and Fast multicoloured voltage reporters via electrochromic FRET Nature Communications , 5, 4625 (2014). doi:10.1038/ncomms5625 |
11. |
V. Venkatachalam, D.Brinks, D. Maclaurin, D. Hochbaum J.L. Kralj, A.E. Cohen Flash Memory: Photochemical imprinting of neuronal action potentials onto a microbial rhodopsin Journal of the American Chemical Society (JACS), 136, 2529, (2014). doi: 10.1021/ja411338t |
10. |
D. Brinks, R. Hildner, E.M.H.P. van Dijk, F.D. Stefani, J.B. Nieder, J. Hernando, N.F. van Hulst Ultrafast dynamics in Single molecules Chemical Society Reviews, 43, 2476 (2014). doi:10.1039/C3CS60269A |
9. |
N. Accanto, J.B. Nieder, Ł. Piatkowski, M. Castro-Lopez, F. Pastorelli, D. Brinks, N. F. van Hulst Phase control of femtosecond pulses on the nanoscale using second harmonic nanoparticles Light: Science and Applications, 3, e143 (2014). doi:10.1038/lsa.2014.24 |
8. |
D. Brinks, M. Castro-Lopez, R. Hildner, N.F. van Hulst Plasmonic antennas as design elements for coherent ultrafast nanophotonics Proceedings of the National Academy of Sciences (PNAS), 110, 18386-18390 (2013). doi: 10.1073/pnas.1308652110 pdf |
7. |
R. Hildner, D. Brinks, J. B. Nieder, R.J. Cogdell, N. F. van Hulst Persistent Quantum Coherent Energy Transfer over Varying Pathways in Single Light-Harvesting Complexes Science 340, 1448-1451 (2013). doi:10.1126/science.1235820 |
6. |
D. Brinks, R. Hildner, F.D. Stefani, N.F. van Hulst Beating Spatio-Temporal Coupling: implications for pulse shaping and coherent control experiments Optics Express 19, 26486-26499 (2011). doi:10.1364/OE.19.026486 |
5. |
M. Castro-Lopez, D. Brinks, R. Sapienza, N.F. van Hulst Aluminum for nonlinear plasmonics: resonance-driven polarized luminescence of Al, Ag, and Au nanoantennas Nano letters 11, 4674-4678 (2011). doi:10.1021/nl202255g |
4. |
D. Brinks, R. Hildner, F.D. Stefani, N.F. van Hulst Coherent control of single molecules at room temperature Faraday Discussions, 153, 51-60 (2011). doi:10.1039/C1FD00087J |
3. |
R.Hildner, D.Brinks, F.D. Stefani, N.F. van Hulst Electronic coherences and vibrational wave-packets in single molecules studied with femtosecond phase-controlled spectroscopy Physical Chemistry Chemical Physics, 13, 1888-1894 (2011). doi:10.1039/C0CP02231D |
2. |
R. Hildner, D. Brinks, N.F. van Hulst Femtosecond coherence and quantum control of single molecules at room temperature Nature Physics, 7, 172-177 (2011). doi:10.1038/nphys1858 |
1. |
D. Brinks, F.D. Stefani, F. Kulzer, R. Hildner, T.H. Taminiau, Y. Avlasevich, K. Müllen, N.F. van Hulst Visualizing and controlling vibrational wave packets of single molecules Nature, 465, 905-908 (2010). doi: 10.1038/nature09110 |
Thesis
D. Brinks Nanoscale Coherent Control: Ultrafast dynamics of single molecules, individual light harvesting complexes and discrete nanoantennas at room temperature Defended October 19 2012. Download: http://www.tdx.cat/handle/10803/97001 |
Conference Proceedings
D. Brinks, F.D.Stefani, N.F. van Hulst Nanoscale Spatial Effects of Pulse Shaping Ultrafast Phenomena XVI, 92, 890 (2009). link |
