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Publications

Peer reviewed articles

32.
G. Flamourakis, Q. Dong, D. Kromm, S. Teurlings, J. van Haren, T. Allertz, H. Smeenk, F.M.S. de Vrij, R.P. Tas, C.S. Smith, D. Brinks, A. Accardo.
Deciphering the Influence of Effective Shear Modulus on Neuronal Network Directionality and Growth Cones Morphology via Laser-assisted 3D Printed Nanostructured Arrays
Advanced Functional Materials, in press, (2024)
31.
A. Castañeda Garcia, J. van Gemert, D. Brinks, N. Tömen
Learning Physics From Video: Unsupervised Physical Parameter Estimation for Continuous Dynamical Systems
arXiv (2024) doi: 10.48550/arXiv.2410.01376
30.
M. Locarno, Q. Dong, X. Meng, C. Glessi, D. Brinks
Fluorescence enhancement of fluorophores in live cells using metallic nanoparticles
Neurophotonics II, 13007, 13-17(2024) doi: 10.1117/12.3017177
29.
L.Engwegen, D. Brinks, W. Böhmer
Generalisation to unseen topologies: Towards control of biological neural network activity
arXiv (2024) doi: 10.48550/arXiv.2407.12789
28.
M. Locarno, Q. Dong, X. Meng, C. Glessi, N. M. Hettema, N. Brandsma, S. Blokhuizen, A. C. Garcia, T. Schmidt, S. Ganapathy, M. Post, L. van Roemburg, B. Xu, C.-T. Cho, L. Laan, M.-P. Chien, D. Brinks
Plasmonic Enhancement of Protein Function
BioRxiv (2024) doi: 10.1101/2024.02.07.579195
27.
M. Locarno, D. Brinks
Analytical calculation of plasmonic resonances in metal nanoparticles: A simple guide
American Journal of Physics, 91(7):538 (2023) doi: 10.1119/5.0094967
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26.
X. Meng, S. Ganapathy, L. van Roemburg, M. Post, D. Brinks
Voltage Imaging with Engineered Proton-Pumping Rhodopsins: Insights from the Proton Transfer Pathway
ACS Physical Chemistry Au, 3(4) (2023) doi: 10.1021/acsphyschemau.3c00003
25.
S. Ganapathy, X. Meng, D. Mossel, M. Jagt, D. Brinks
Expanding the family of genetically encoded voltage indicators with a candidate Heliorhodopsin exhibiting near-infrared fluorescence
Journal of Biological Chemistry, 299(13):104771 (2023) doi: 10.1016/j.jbc.2023.104771
24.
X. Meng, L. Huismans, T. Huijben, G. Szabo, R. van Tol, I. de Heer, S. Ganapathy, D. Brinks
A compact microscope for voltage imaging
Journal of Optics, 24, 054004 (2022) doi: 10.1088/2040-8986/ac5dd5
23.
M.-P. Chien, D. Brinks
Functional single-cell sequencing links dynamic phenotypes to their genotypes.
Nature Biomedical Engineering, 6, 5, 501-502 (2022), doi: 10.1038/s41551-022-00877-3
22.
L. You, P. Su, M. Betjes, R. G. Rad, T. Chou, C. Beerens, E. van Oosten, F. Leufkens, P. Gasecka, M. Muraro, R. van Tol, D. van Steenderen, S. Farooq, J. A. U. Hardillo, R. B. de Jong, D. Brinks*, M.-P. Chien*
Linking the genotypes and phenotypes of cancer cells in heterogenous populations via real-time optical tagging and image analysis
Nature Biomedical Engineering, 6, 5, 667–675 (2022), doi: 10.1038/s41551-022-00853-x
21.
W. Bloxham, D. Brinks, S. Kheifets, A.E. Cohen
Linearly polarized excitation enhances signals from fluorescent voltage indicators
Biophysical Journal, 120, 23, 5333-5342 (2021). doi: 10.1016/j.bpj.2021.10.028
20.
Q. Li, C.N. Hulleman, R.J. Moerland, E. Mailvaganam, S. Ganapathy, D. Brinks, S. Stallinga, B. Rieger
Waveguide-based total internal reflection fluorescence microscope enabling cellular imaging under cryogenic conditions
Optics Express, 29, 21, 34097-34108 (2021). doi: 10.1364/OE.433945
19.
M.-P. Chien*, D. Brinks*, G. Testa-Silva, H. Tian, F.P. Brooks III, Y. Adam, W. Bloxham, B. Gmeiner, S. Kheifets, A.E. Cohen
Photoactivated voltage imaging in tissue with an Archaerhodopsin-derived reporter
Science Advances, 7, 19, eabe3216 (2021). doi: 10.1126/sciadv.abe3216
18.
Y. Adam, J.J. Kim, S. Lou, Y. Zhao, M.Xie, D. Brinks, H. Wu, M. A. Mostajo-Radji, S. Kheifets, V. Parot, S. Chettih, K.J. Williams, B. Gmeiner, S.L. Farhi, L. Madisen, E.K. Buchanan, I. Kinsella, D. Zhou, L. Paninski, C.D. Harvey, H. Zeng, P. Arlotta, R.E .Campbell, A.E. Cohen
Voltage Imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.
Nature, 569, 413 (2019). doi: 10.1038/s41586-019-1166-7
17.
D. Brinks, Y. Adam, S. Kheifets, A.E. Cohen
Painting with rainbows: Patterning Light in Space, Time, and Wavelength for Optogenetic Sensing and Control
Accounts of Chemical Research, 49, 2518–2526 (2016).
doi: 10.1021/acs.accounts.6b00415
16.
A. Abdelfattah, S. Farhi, Y. Zhao, D. Brinks, P. Zou, A. Ruangkittisakuul, J. PLatisa, V. Pieribone, K. Ballanyi, A.E. Cohen, R. Campbell
A bright and fast red fluorescent protein voltage indicator that reports neuronal activity in organotypic brain slices
Journal of Neuroscience 36, 8, 2458-2472 (2016). doi: 10.1523/JNEUROSCI.3484-15.2016
15.
H.Lee*, D. Brinks*, A.E. Cohen
Two-photon imaging of a magneto-fluorescent indicator for 3D optical magnetometry
Optics Express, 23, 28022-28030 (2015). doi:10.1364/OE.23.028022
*equal contributions
14.
D.Brinks, A.J. Klein, A.E. Cohen
Two-Photon fluorescence lifetime imaging (2P-FLIM) of genetically encoded voltage indicators as a probe of absolute membrane voltage
Biophysical Journal, 109, 5,914-921 (2015). doi:10.1016/j.bpj.2015.07.038
13.
M. Castro-Lopez, D. Brinks, N.F. van Hulst
Nonreciprocal optical antennas
Arxiv: 1412.4797 (2014)
12.
P. Zou, Y. Zhao, A.D. Douglass, D.R. Hochbaum, D. Brinks, C.A. Werley, D.J. Harrison, R.E. Campbell, A.E. Cohen
Bright and Fast multicoloured voltage reporters via electrochromic FRET
Nature Communications , 5, 4625 (2014). doi:10.1038/ncomms5625
11.
V. Venkatachalam, D.Brinks, D. Maclaurin, D. Hochbaum J.L. Kralj, A.E. Cohen
Flash Memory: Photochemical imprinting of neuronal action potentials onto a microbial rhodopsin
Journal of the American Chemical Society (JACS), 136, 2529, (2014). doi: 10.1021/ja411338t
10.
D. Brinks, R. Hildner, E.M.H.P. van Dijk, F.D. Stefani, J.B. Nieder, J. Hernando, N.F. van Hulst
Ultrafast dynamics in Single molecules
Chemical Society Reviews, 43, 2476 (2014). doi:10.1039/C3CS60269A
9.
N. Accanto, J.B. Nieder, Ł. Piatkowski, M. Castro-Lopez, F. Pastorelli, D. Brinks, N. F. van Hulst
Phase control of femtosecond pulses on the nanoscale using second harmonic nanoparticles
Light: Science and Applications, 3, e143 (2014). doi:10.1038/lsa.2014.24
8.
D. Brinks, M. Castro-Lopez, R. Hildner, N.F. van Hulst
Plasmonic antennas as design elements for coherent ultrafast nanophotonics
Proceedings of the National Academy of Sciences (PNAS), 110, 18386-18390 (2013). doi: 10.1073/pnas.1308652110  pdf
7.
R. Hildner, D. Brinks, J. B. Nieder, R.J. Cogdell, N. F. van Hulst
Persistent Quantum Coherent Energy Transfer over Varying Pathways in Single Light-Harvesting Complexes
Science 340, 1448-1451 (2013). doi:10.1126/science.1235820
6.
D. Brinks, R. Hildner, F.D. Stefani, N.F. van Hulst
Beating Spatio-Temporal Coupling: implications for pulse shaping and coherent control experiments
Optics Express 19, 26486-26499 (2011). doi:10.1364/OE.19.026486
5.
M. Castro-Lopez, D. Brinks, R. Sapienza, N.F. van Hulst
Aluminum for nonlinear plasmonics: resonance-driven polarized luminescence of Al, Ag, and Au nanoantennas
Nano letters 11, 4674-4678 (2011). doi:10.1021/nl202255g
4.
D. Brinks, R. Hildner, F.D. Stefani, N.F. van Hulst
Coherent control of single molecules at room temperature
Faraday Discussions, 153, 51-60 (2011). doi:10.1039/C1FD00087J
3.
R.Hildner, D.Brinks, F.D. Stefani, N.F. van Hulst
Electronic coherences and vibrational wave-packets in single molecules studied with femtosecond phase-controlled spectroscopy
Physical Chemistry Chemical Physics, 13, 1888-1894 (2011). doi:10.1039/C0CP02231D
2.
R. Hildner, D. Brinks, N.F. van Hulst
Femtosecond coherence and quantum control of single molecules at room temperature
Nature Physics, 7, 172-177 (2011). doi:10.1038/nphys1858
1.
D. Brinks, F.D. Stefani, F. Kulzer, R. Hildner, T.H. Taminiau, Y. Avlasevich, K. Müllen, N.F. van Hulst
Visualizing and controlling vibrational wave packets of single molecules
Nature, 465, 905-908 (2010). doi: 10.1038/nature09110

Thesis

 
D. Brinks
Nanoscale Coherent Control: Ultrafast dynamics of single molecules, individual light harvesting complexes and discrete nanoantennas  at room temperature
Defended October 19 2012. Download: http://www.tdx.cat/handle/10803/97001

Conference Proceedings

 
D. Brinks, F.D.Stefani, N.F. van Hulst
Nanoscale Spatial Effects of Pulse Shaping
Ultrafast Phenomena XVI, 92, 890 (2009). link

Google scholar profile

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